3KXT Dna Binding Protein Dna date Dec 03, 2009
title Crystal Structure Of Sulfolobus Cren7-Dsdna Complex
authors Y.Feng, J.Wang
compound source
Molecule: Chromatin Protein Cren7
Chain: A
Fragment: Residues 6-60
Engineered: Yes
Organism_scientific: Sulfolobus Solfataricus
Organism_taxid: 2287
Gene: Sso6901
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30a

Molecule: 5'-D(Gpcpgpaptpcpgpc)-3'
Chain: B, C
Engineered: Yes

Synthetic: Yes
symmetry Space Group: C 2 2 21
R_factor 0.176 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.190 53.115 90.753 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
note 3KXT is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the crenarchaeal conserved chromatin protein Cren7 and double-stranded DNA complex., Feng Y, Yao H, Wang J, Protein Sci. 2010 Jun;19(6):1253-7. PMID:20512977
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (3kxt.pdb1.gz) 52 Kb
  • CSU: Contacts of Structural Units for 3KXT
  • Structure Factors (233 Kb)
  • Retrieve 3KXT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KXT from S2C, [Save to disk]
  • Re-refined 3kxt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KXT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KXT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KXT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kxt_B] [3kxt_A] [3kxt] [3kxt_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3KXT
  • Community annotation for 3KXT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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