3KXU Metal Binding Protein date Dec 04, 2009
title Crystal Structure Of Human Ferritin Ftl498instc Pathogenic M
authors T.Granier, B.Gallois, B.Langlois D'Estaintot, P.Arosio
compound source
Molecule: Ferritin
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ftl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pds20ptrp
symmetry Space Group: I 4 3 2
R_factor 0.179 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
151.355 151.355 151.355 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand CD, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMutant ferritin L-chains that cause neurodegeneration act in a dominant-negative manner to reduce ferritin iron incorporation., Luscieti S, Santambrogio P, Langlois d'Estaintot B, Granier T, Cozzi A, Poli M, Gallois B, Finazzi D, Cattaneo A, Levi S, Arosio P, J Biol Chem. 2010 Apr 16;285(16):11948-57. Epub 2010 Feb 16. PMID:20159981
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (3kxu.pdb1.gz) 700 Kb
  • LPC: Ligand-Protein Contacts for 3KXU
  • CSU: Contacts of Structural Units for 3KXU
  • Structure Factors (1349 Kb)
  • Retrieve 3KXU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KXU from S2C, [Save to disk]
  • Re-refined 3kxu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KXU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3KXU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KXU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kxu_A] [3kxu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3KXU
  • Community annotation for 3KXU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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