3KYS Transcription Protein Binding date Dec 07, 2009
title Crystal Structure Of Human Yap And Tead Complex
authors Z.Li, B.Zhao, P.Wang, F.Chen, Z.Dong, H.Yang, K.L.Guan, Y.Xu
compound source
Molecule: Transcriptional Enhancer Factor Tef-1
Chain: A, C
Fragment: Yap Binding Domain
Synonym: Tea Domain Family Member 1, Tead-1, Protein Gt- Iic, Transcription Factor 13, Ntef-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tead1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prsfduet-1

Molecule: 65 Kda Yes-Associated Protein
Chain: B, D
Fragment: Tead Binding Domain
Synonym: Yap65
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Yap
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 21 21 21
R_factor 0.210 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.643 110.503 165.695 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand BME enzyme
note 3KYS is a representative structure
Primary referenceStructural insights into the YAP and TEAD complex., Li Z, Zhao B, Wang P, Chen F, Dong Z, Yang H, Guan KL, Xu Y, Genes Dev. 2010 Feb 1;24(3):235-40. PMID:20123905
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (3kys.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (3kys.pdb2.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 3KYS
  • CSU: Contacts of Structural Units for 3KYS
  • Structure Factors (236 Kb)
  • Retrieve 3KYS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KYS from S2C, [Save to disk]
  • Re-refined 3kys structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KYS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KYS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3KYS, from MSDmotif at EBI
  • Fold representative 3kys from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kys_D] [3kys_A] [3kys_B] [3kys_C] [3kys]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3KYS
  • Community annotation for 3KYS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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