3KYT	Lipid Binding Protein	date	Dec 07, 2009
title	Crystal Structure Of Orphan Nuclear Receptor Rorgamma In Com Natural Ligand
authors	D.Martynowski, Y.Li
compound		source
Molecule: Nuclear Receptor Ror-Gamma Chain: A Fragment: Lipid Binding Domain Synonym: Retinoid-Related Orphan Receptor-Gamma, Nuclear Re Rzr-Gamma, Nuclear Receptor Subfamily 1 Group F Member 3; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rorc, Nr1f3, Rorg, Rzrg Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Nuclear Receptor Coactivator 2 Chain: C Fragment: Scr2-2 Synonym: Ncoa-2, Transcriptional Intermediary Factor 2, Hti Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 41 21 2	R_factor 0.197 R_Free 0.298
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.978 53.978 162.583 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.35 Å
ligand	HC2	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural Basis for Hydroxycholesterols as Natural Ligands of Orphan Nuclear Receptor ROR{gamma}, Jin L, Martynowski D, Zheng S, Wada T, Xie W, Li Y, Mol Endocrinol. 2010 Mar 4. PMID:20203100

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk] Biological Unit Coordinates (3kyt.pdb1.gz) 45 Kb LPC: Ligand-Protein Contacts for 3KYT CSU: Contacts of Structural Units for 3KYT Structure Factors (162 Kb) Retrieve 3KYT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KYT from S2C, [Save to disk] Re-refined 3kyt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KYT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3KYT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3KYT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kyt] [3kyt_C] [3kyt_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3KYT: [HOLI ] by SMART

Other resources with information on 3KYT

Community annotation for 3KYT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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