3KZ7 Isomerase Inhibitor date Dec 08, 2009
title C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
authors E.A.Stura, A.Galat
compound source
Molecule: Fk506-Binding Protein 3
Chain: A
Fragment: Fk506-Like Binding Domain (Unp Residues 106-224)
Synonym: Peptidyl-Prolyl Cis-Trans Isomerase, Ppiase, Rotam Kda Fkbp, Fkbp-25, Rapamycin-Selective 25 Kda Immunophilin;
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Fkbp25, Fkbp3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-2
symmetry Space Group: P 41 21 2
R_factor 0.175 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.649 85.649 53.090 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand RAP enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiversified targets of FKBP25 and its complex with rapamycin., Galat A, Thai R, Stura EA, Int J Biol Macromol. 2014 May 29;69C:344-352. doi:, 10.1016/j.ijbiomac.2014.05.060. PMID:24879919
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (3kz7.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 3KZ7
  • CSU: Contacts of Structural Units for 3KZ7
  • Structure Factors (189 Kb)
  • Retrieve 3KZ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KZ7 from S2C, [Save to disk]
  • Re-refined 3kz7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3KZ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3KZ7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KZ7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kz7] [3kz7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3KZ7
  • Community annotation for 3KZ7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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