3KZD	Signaling Protein	date	Dec 08, 2009
title	Crystal Structure Of Free T-Cell Lymphoma Invasion And Metas Pdz Domain
authors	T.R.Shepherd, E.J.Fuentes
compound		source
Molecule: T-Lymphoma Invasion And Metastasis-Inducing Prote Chain: A Fragment: Pdz Domain Synonym: Tiam-1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tiam1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21a-6his-Rtev
symmetry	Space Group: P 32 2 1	R_factor 0.196 R_Free 0.224
crystal cell	length a length b length c angle alpha angle beta angle gamma 44.782 44.782 70.799 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.30 Å
Gene Ontology	Chain Function Process Component A
Primary reference	The Tiam1 PDZ Domain Couples to Syndecan1 and Promotes Cell-Matrix Adhesion., Shepherd TR, Klaus SM, Liu X, Ramaswamy S, Demali KA, Fuentes EJ, J Mol Biol. 2010 Mar 31. PMID:20361982

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk] Biological Unit Coordinates (3kzd.pdb1.gz) 29 Kb CSU: Contacts of Structural Units for 3KZD Structure Factors (872 Kb) Retrieve 3KZD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KZD from S2C, [Save to disk] Re-refined 3kzd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KZD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3KZD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3KZD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kzd_A] [3kzd] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3KZD: [PDZ ] by SMART

Other resources with information on 3KZD

Community annotation for 3KZD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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