3L0B Hydrolase date Dec 09, 2009
title Crystal Structure Of Scp1 Phosphatase D206a Mutant Phosphory Intermediate
authors M.Zhang, Y.Zhang
compound source
Molecule: Carboxy-Terminal Domain Rna Polymerase II Polypep Small Phosphatase 1;
Chain: A, B
Fragment: C-Terminal Domain
Synonym: Nuclear Lim Interactor-Interacting Factor 3, Nli-I Factor 3, Nli-If;
Ec: 3.1.3.16
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ctdsp1, Nif3, Nliif, Scp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: C 1 2 1
R_factor 0.190 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.666 78.187 62.585 90.00 112.34 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand 1PG, MG, PHD enzyme Hydrolase E.C.3.1.3.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and functional analysis of the phosphoryl transfer reaction mediated by the human small C-terminal domain phosphatase, Scp1., Zhang M, Liu J, Kim Y, Dixon JE, Pfaff SL, Gill GN, Noel JP, Zhang Y, Protein Sci. 2010 Mar 10. PMID:20222012
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (3l0b.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (3l0b.pdb2.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 3L0B
  • CSU: Contacts of Structural Units for 3L0B
  • Structure Factors (328 Kb)
  • Retrieve 3L0B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L0B from S2C, [Save to disk]
  • Re-refined 3l0b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3L0B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3L0B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L0B, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l0b_B] [3l0b_A] [3l0b]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3L0B: [CPDc ] by SMART
  • Other resources with information on 3L0B
  • Community annotation for 3L0B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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