3L0T Hydrolase Hydrolase Inhibitor date Dec 10, 2009
title Crystal Structure Of Catalytic Domain Of Tace With Hydantoin
authors P.Orth
compound source
Molecule: Disintegrin And Metalloproteinase Domain-Containi 17;
Chain: A, B
Fragment: Residues 215-476
Synonym: Adam 17, Tnf-Alpha-Converting Enzyme, Tnf-Alpha Co Snake Venom-Like Protease;
Ec: 3.4.24.86
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adam17, Csvp, Tace
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.198 75.512 102.724 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.92 Å
ligand INN, IPA, Z94, ZN enzyme Hydrolase E.C.3.4.24.86 BRENDA
Primary referenceDiscovery and SAR of hydantoin TACE inhibitors., Yu W, Guo Z, Orth P, Madison V, Chen L, Dai C, Feltz RJ, Girijavallabhan VM, Kim SH, Kozlowski JA, Lavey BJ, Li D, Lundell D, Niu X, Piwinski JJ, Popovici-Muller J, Rizvi R, Rosner KE, Shankar BB, Shih NY, Siddiqui MA, Sun J, Tong L, Umland S, Wong MK, Yang DY, Zhou G, Bioorg Med Chem Lett. 2010 Mar 15;20(6):1877-80. Epub 2010 Feb 4. PMID:20172725
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (3l0t.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (3l0t.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3L0T
  • CSU: Contacts of Structural Units for 3L0T
  • Structure Factors (1066 Kb)
  • Retrieve 3L0T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L0T from S2C, [Save to disk]
  • Re-refined 3l0t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3L0T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3L0T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3L0T, from MSDmotif at EBI
  • Fold representative 3l0t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l0t] [3l0t_B] [3l0t_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3L0T with the sequences similar proteins can be viewed for 3L0T's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3L0T
  • Community annotation for 3L0T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science