3L28 Rna Binding Protein date Dec 14, 2009
title Crystal Structure Of Zaire Ebola Vp35 Interferon Inhibitory K339a Mutant
authors D.W.Leung, K.C.Prins, D.M.Borek, M.Farahbakhsh, J.M.Tufariello, P J.C.Nix, L.A.Helgeson, Z.Otwinowski, R.B.Honzatko, C.F.Basler, G.K.Amarasinghe
compound source
Molecule: Polymerase Cofactor Vp35
Chain: A, B, C, D, E, F
Fragment: Vp35 Interferon Inhibitory Domain
Engineered: Yes
Mutation: Yes
 Organism_scientific: Zaire Ebolavirus
Organism_common: Zebov
Organism_taxid: 128952
Strain: Mayinga-76
Gene: Vp35
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet15b
symmetry Space Group: P 1 21 1
R_factor 0.200 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.381 91.880 102.595 90.00 99.60 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CL, MSE, NA, SO4 enzyme
Primary referenceStructural basis for dsRNA recognition and interferon antagonism by Ebola VP35., Leung DW, Prins KC, Borek DM, Farahbakhsh M, Tufariello JM, Ramanan P, Nix JC, Helgeson LA, Otwinowski Z, Honzatko RB, Basler CF, Amarasinghe GK, Nat Struct Mol Biol. 2010 Feb;17(2):165-72. Epub 2010 Jan 17. PMID:20081868
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (3l28.pdb1.gz) 120 Kb
  • LPC: Ligand-Protein Contacts for 3L28
  • CSU: Contacts of Structural Units for 3L28
  • Structure Factors (558 Kb)
  • Retrieve 3L28 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L28 from S2C, [Save to disk]
  • Re-refined 3l28 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3L28 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3L28
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L28, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l28_D] [3l28_C] [3l28_E] [3l28_F] [3l28_A] [3l28] [3l28_B]
  • SWISS-PROT database: [Q05127]
  • Domain organization of [VP35_EBOZM] by SWISSPFAM
    • Other resources with information on 3L28
  • Community annotation for 3L28 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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