3L2V Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese and MK0518 (Raltegravir) date
authors Hare, S., Gupta, S.S., Cherepanov, P.
compound source
symmetry
R_factor
R_Free 0.23204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.20
ligand GOL, MN, NH4, RLT, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRetroviral intasome assembly and inhibition of DNA strand transfer., Hare S, Gupta SS, Valkov E, Engelman A, Cherepanov P, Nature. 2010 Jan 31. PMID:20118915
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk]
  • Biological Unit Coordinates (3l2v.pdb1.gz) 342 Kb
  • LPC: Ligand-Protein Contacts for 3L2V
  • CSU: Contacts of Structural Units for 3L2V
  • Structure Factors (1468 Kb)
  • Retrieve 3L2V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L2V from S2C, [Save to disk]
  • Re-refined 3l2v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3L2V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3L2V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3L2V, from MSDmotif at EBI
  • Fold representative 3l2v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l2v_D] [3l2v_C] [3l2v_A] [3l2v_B] [3l2v]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3L2V
  • Community annotation for 3L2V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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