3L43 Hydrolase date Dec 18, 2009
title Crystal Structure Of The Dynamin 3 Gtpase Domain Bound With
authors S.Yang, W.Tempel, Y.Tong, L.Nedyalkova, X.Guan, L.Crombet, C.H.Arr A.M.Edwards, C.Bountra, J.Weigelt, A.Bochkarev, H.Park, Structur Genomics Consortium (Sgc)
compound source
Molecule: Dynamin-3
Chain: A, B, C, D
Synonym: Dynamin, T-Dynamin
Ec: 3.6.5.5
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dnm3, Kiaa0820
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21-V2r-Prare2
Expression_system_plasmid: Pet28-Mhl (Gi:134105571)
symmetry Space Group: P 1 21 1
R_factor 0.229 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.286 166.500 74.985 90.00 109.02 90.00
method X-Ray Diffractionresolution 2.27 Å
ligand GDP, UNX enzyme Hydrolase E.C.3.6.5.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (3l43.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (3l43.pdb2.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 3L43
  • CSU: Contacts of Structural Units for 3L43
  • Structure Factors (2105 Kb)
  • Retrieve 3L43 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L43 from S2C, [Save to disk]
  • Re-refined 3l43 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3L43 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3L43
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3L43, from MSDmotif at EBI
  • Fold representative 3l43 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l43_B] [3l43] [3l43_D] [3l43_A] [3l43_C]
  • SWISS-PROT database: [Q9UQ16]
  • Domain organization of [DYN3_HUMAN] by SWISSPFAM
  • Domain found in 3L43: [DYNc ] by SMART
  • Other resources with information on 3L43
  • Community annotation for 3L43 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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