3L4B Transport Protein date Dec 18, 2009
title Crystal Structure Of An Octomeric Two-Subunit Trka K+ Channe Gating Assembly, Tm1088a:Tm1088b, From Thermotoga Maritima
authors M.C.Deller, H.A.Johnson, M.Miller, G.Spraggon, I.A.Wilson, S.A.Le Joint Center For Structural Genomics (Jcsg)
compound source
Molecule: Trka K+ Channel Protein Tm1088a
Chain: A, B, E, F
Engineered: Yes
Organism_scientific: Thermotoga Maritima
Organism_taxid: 243274
Strain: Msb8
Gene: Tm1088
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Trka K+ Channel Protein Tm1088b
Chain: C, D, G, H
Engineered: Yes

Organism_scientific: Thermotoga Maritima
Organism_taxid: 243274
Strain: Msb8
Gene: Tm1088
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.259 R_Free 0.308
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.778 96.778 305.098 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.45 Å
ligand AMP, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B
  • potassium ion transmembrane ...


  • H, C, D, G
  • cation transmembrane transpo...
  • potassium ion transmembrane ...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk]
  • Biological Unit Coordinates (3l4b.pdb1.gz) 176 Kb
  • LPC: Ligand-Protein Contacts for 3L4B
  • CSU: Contacts of Structural Units for 3L4B
  • Structure Factors (336 Kb)
  • Retrieve 3L4B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L4B from S2C, [Save to disk]
  • Re-refined 3l4b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3L4B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3L4B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L4B, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l4b_H] [3l4b_B] [3l4b] [3l4b_C] [3l4b_A] [3l4b_E] [3l4b_D] [3l4b_F] [3l4b_G]
  • SWISS-PROT database: [D3KFX7] [D3KFX8]
  • Domain organization of [D3KFX7_THEMA] [D3KFX8_THEMA] by SWISSPFAM
  • Other resources with information on 3L4B
  • Community annotation for 3L4B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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