3L4H Protein Binding date Dec 20, 2009
title Helical Box Domain And Second Ww Domain Of The Human E3 Ubiq Protein Ligase Hecw1
authors J.R.Walker, L.Qiu, Y.Li, J.Weigelt, C.Bountra, C.H.Arrowsmith, A.M A.Botchkarev, S.Dhe-Paganon, Structural Genomics Consortium (
compound source
Molecule: E3 Ubiquitin-Protein Ligase Hecw1
Chain: A
Fragment: Helical Box And Second Ww Domain (Unp Residues 94
Synonym: Hect, C2 And Ww Domain-Containing Protein 1, Nedd4 Ubiquitin-Protein Ligase 1, Hnedl1;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hecw1, Kiaa0322, Nedl1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) V2r
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a-Lic
symmetry Space Group: P 1 21 1
R_factor 0.150 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
26.079 44.082 39.610 90.00 92.54 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ACY, MSE enzyme Ligase E.C.6.3.2 BRENDA
note 3L4H is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (3l4h.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 3L4H
  • CSU: Contacts of Structural Units for 3L4H
  • Structure Factors (116 Kb)
  • Retrieve 3L4H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L4H from S2C, [Save to disk]
  • Re-refined 3l4h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3L4H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3L4H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L4H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l4h_A] [3l4h]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3L4H: [WW ] by SMART
  • Other resources with information on 3L4H
  • Community annotation for 3L4H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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