3L5B	Hydrolase	date	Dec 21, 2009
title	Structure Of Bace Bound To Sch713601
authors	C.Strickland, Z.Zhu
compound		source
Molecule: Beta-Secretase 1 Chain: A, B Synonym: Beta-Site Amyloid Precursor Protein Cleaving Enzym Site App Cleaving Enzyme 1, Membrane-Associated Aspartic Pr Memapsin-2, Aspartyl Protease 2, Asp 2, Asp2; Ec: 3.4.23.46 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bace, Bace1, Kiaa1149 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Pet11a
symmetry	Space Group: P 21 21 21	R_factor 0.195 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 86.169 89.433 130.949 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	BDO, TAR	enzyme	Hydrolase E.C.3.4.23.46 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Discovery of Cyclic Acylguanidines as Highly Potent and Selective beta-Site Amyloid Cleaving Enzyme (BACE) Inhibitors: Part I-Inhibitor Design and Validation ( parallel) (1)., Zhu Z, Sun ZY, Ye Y, Voigt J, Strickland C, Smith EM, Cumming J, Wang L, Wong J, Wang YS, Wyss DF, Chen X, Kuvelkar R, Kennedy ME, Favreau L, Parker E, McKittrick BA, Stamford A, Czarniecki M, Greenlee W, Hunter JC, J Med Chem. 2010 Feb 11;53(3):951-65. PMID:20043696

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk] Biological Unit Coordinates (3l5b.pdb1.gz) 74 Kb Biological Unit Coordinates (3l5b.pdb2.gz) 73 Kb LPC: Ligand-Protein Contacts for 3L5B CSU: Contacts of Structural Units for 3L5B Structure Factors (1539 Kb) Retrieve 3L5B in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3L5B from S2C, [Save to disk] Re-refined 3l5b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3L5B in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3L5B

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3L5B, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3l5b_A] [3l5b_B] [3l5b] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3L5B

Community annotation for 3L5B at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---