3L5I Immune System date Dec 22, 2009
title Crystal Structure Of Fniii Domains Of Human Gp130 (Domains 4
authors N.J.Kershaw, J.G.Zhang, T.P.J.Garrett, P.E.Czabotar
compound source
Molecule: Interleukin-6 Receptor Subunit Beta
Chain: A
Fragment: Unp Residues 323-612
Synonym: Il-6r-Beta, Interleukin-6 Signal Transducer, Membr Glycoprotein 130, Gp130, Cdw130, Oncostatin-M Receptor Subu
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gp130, Il6st
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-Duet
symmetry Space Group: P 21 21 21
R_factor 0.181 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.565 75.347 107.185 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CL, EDO, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the entire ectodomain of gp130: insights into the molecular assembly of the tall cytokine receptor complexes., Xu Y, Kershaw NJ, Luo CS, Soo P, Pocock MJ, Czabotar PE, Hilton DJ, Nicola NA, Garrett TP, Zhang JG, J Biol Chem. 2010 Jul 9;285(28):21214-8. Epub 2010 May 20. PMID:20489211
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (3l5i.pdb1.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 3L5I
  • CSU: Contacts of Structural Units for 3L5I
  • Structure Factors (741 Kb)
  • Retrieve 3L5I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L5I from S2C, [Save to disk]
  • Re-refined 3l5i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3L5I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3L5I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L5I, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l5i] [3l5i_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3L5I: [FN3 ] by SMART
  • Other resources with information on 3L5I
  • Community annotation for 3L5I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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