3L5W Immune System date Dec 22, 2009
title Crystal Structure Of The Complex Between Il-13 And C836 Fab
authors A.Teplyakov, G.Obmolova, T.Malia, G.L.Gilliland
compound source
Molecule: C836 Light Chain
Chain: L, A
Fragment: Chimeric Molecule Of Mouse Variable Domain And Hu Constant Domain;
Engineered: Yes
Organism_scientific: Mus Musculus, Homo Sapiens
Organism_taxid: 10090,9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_cell_line: Chinese Hamster Ovary (Cho) Ce

Molecule: C836 Heavy Chain
Chain: H, B
Fragment: Chimeric Molecule Of Mouse Variable Domain And Hu Constant Domain;
Engineered: Yes

Organism_scientific: Mus Musculus, Homo Sapiens
Organism_taxid: 10090,9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_cell_line: Chinese Hamster Ovary (Cho) Ce

Molecule: Interleukin-13
Chain: I, J
Fragment: Unp Residues 35-146
Synonym: Il-13
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il13, Nc30
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.205 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.620 65.560 118.740 90.00 107.02 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL enzyme
note 3L5W is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
J, I
  • cytokine activity


  • Primary referenceHuman Framework Adaptation of a Mouse Anti-Human IL-13 Antibody., Fransson J, Teplyakov A, Raghunathan G, Chi E, Cordier W, Dinh T, Feng Y, Giles-Komar J, Gilliland G, Lollo B, Malia TJ, Nishioka W, Obmolova G, Zhao S, Zhao Y, Swanson RV, Almagro JC, J Mol Biol. 2010 Mar 10. PMID:20226193
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]
  • Biological Unit Coordinates (3l5w.pdb1.gz) 90 Kb
  • Biological Unit Coordinates (3l5w.pdb2.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 3L5W
  • CSU: Contacts of Structural Units for 3L5W
  • Structure Factors (521 Kb)
  • Retrieve 3L5W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L5W from S2C, [Save to disk]
  • Re-refined 3l5w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3L5W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3L5W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3L5W, from MSDmotif at EBI
  • Fold representative 3l5w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l5w_I] [3l5w_A] [3l5w] [3l5w_L] [3l5w_B] [3l5w_J] [3l5w_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3L5W: [IGc1] [IGv] [IL4_13 ] by SMART
  • Other resources with information on 3L5W
  • Community annotation for 3L5W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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