3L5W Immune System date Dec 22, 2009
title Crystal Structure Of The Complex Between Il-13 And C836 Fab
authors A.Teplyakov, G.Obmolova, T.Malia, G.L.Gilliland
compound source
Molecule: C836 Light Chain
Chain: L, A
Fragment: Chimeric Molecule Of Mouse Variable Domain And Hu Constant Domain;
Engineered: Yes
Organism_scientific: Mus Musculus, Homo Sapiens
Organism_taxid: 10090,9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_cell_line: Chinese Hamster Ovary (Cho) Ce

Molecule: C836 Heavy Chain
Chain: H, B
Fragment: Chimeric Molecule Of Mouse Variable Domain And Hu Constant Domain;
Engineered: Yes

Organism_scientific: Mus Musculus, Homo Sapiens
Organism_taxid: 10090,9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_cell_line: Chinese Hamster Ovary (Cho) Ce

Molecule: Interleukin-13
Chain: I, J
Fragment: Unp Residues 35-146
Synonym: Il-13
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il13, Nc30
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.205 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.620 65.560 118.740 90.00 107.02 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL enzyme
note 3L5W is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
J, I
  • cytokine activity


  • Primary referenceHuman Framework Adaptation of a Mouse Anti-Human IL-13 Antibody., Fransson J, Teplyakov A, Raghunathan G, Chi E, Cordier W, Dinh T, Feng Y, Giles-Komar J, Gilliland G, Lollo B, Malia TJ, Nishioka W, Obmolova G, Zhao S, Zhao Y, Swanson RV, Almagro JC, J Mol Biol. 2010 Mar 10. PMID:20226193
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]
  • Biological Unit Coordinates (3l5w.pdb1.gz) 90 Kb
  • Biological Unit Coordinates (3l5w.pdb2.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 3L5W
  • CSU: Contacts of Structural Units for 3L5W
  • Structure Factors (521 Kb)
  • Retrieve 3L5W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L5W from S2C, [Save to disk]
  • Re-refined 3l5w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3L5W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3L5W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3L5W, from MSDmotif at EBI
  • Fold representative 3l5w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l5w_I] [3l5w_A] [3l5w] [3l5w_L] [3l5w_B] [3l5w_J] [3l5w_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3L5W: [IGc1] [IGv] [IL4_13 ] by SMART
  • Alignments of the sequence of 3L5W with the sequences similar proteins can be viewed for 3L5W's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3L5W
  • Community annotation for 3L5W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science