4PS4 Immune System date Mar 06, 2014
title Crystal Structure Of The Complex Between Il-13 And M1295 Fab
authors A.Teplyakov, G.Obmolova, T.Malia, G.L.Gilliland
compound source
Molecule: M1295 Light Chain
Chain: L
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek

Molecule: M1295 Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek

Molecule: Interleukin-13
Chain: A
Fragment: Unp Residues 35-146
Synonym: Il-13
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il13, Nc30
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.211 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.210 72.160 113.820 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand PCA enzyme
note 4PS4 supersedes 3L5Y
Gene
Ontology
ChainFunctionProcessComponent
A
  • cytokine activity


  • Primary referenceHuman framework adaptation of a mouse anti-human IL-13 antibody., Fransson J, Teplyakov A, Raghunathan G, Chi E, Cordier W, Dinh T, Feng Y, Giles-Komar J, Gilliland G, Lollo B, Malia TJ, Nishioka W, Obmolova G, Zhao S, Zhao Y, Swanson RV, Almagro JC, J Mol Biol. 2010 Apr 30;398(2):214-31. Epub 2010 Mar 10. PMID:20226193
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (4ps4.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 4PS4
  • CSU: Contacts of Structural Units for 4PS4
  • Structure Factors (138 Kb)
  • Retrieve 4PS4 in mmCIF format [Save to disk]
  • Re-refined 4ps4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PS4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PS4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4PS4, from MSDmotif at EBI
  • Fold representative 4ps4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ps4_A] [4ps4] [4ps4_H] [4ps4_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4PS4: [IGc1] [IGv] [IL4_13 ] by SMART
  • Other resources with information on 4PS4
  • Community annotation for 4PS4 at PDBWiki (http://pdbwiki.org)

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