3L6Y	Cell Adhesion	date	Dec 27, 2009
title	Crystal Structure Of P120 Catenin In Complex With E-Cadherin
authors	N.Ishiyama, S.H.Lee, S.Liu, G.Y.Li, M.J.Smith, L.F.Reichardt, M.
compound		source
Molecule: Catenin Delta-1 Chain: A, C, E Fragment: P120 Catenin Isoform 4a Synonym: P120 Catenin, P120(Ctn), Cadherin-Associated Src S Cas, P120(Cas); Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ctnnd1, Kiaa0384 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-4t1
Molecule: E-Cadherin Chain: B, D, F Fragment: E-Cadherin Juxtamembrane Domain Core Region Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 31	R_factor 0.232 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 106.177 106.177 173.207 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.00 Å
Gene Ontology	Chain Function Process Component A, C, E
Primary reference	Dynamic and static interactions between p120 catenin and E-cadherin regulate the stability of cell-cell adhesion., Ishiyama N, Lee SH, Liu S, Li GY, Smith MJ, Reichardt LF, Ikura M, Cell. 2010 Apr 2;141(1):117-28. PMID:20371349

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk] Biological Unit Coordinates (3l6y.pdb1.gz) 58 Kb Biological Unit Coordinates (3l6y.pdb2.gz) 61 Kb Biological Unit Coordinates (3l6y.pdb3.gz) 65 Kb CSU: Contacts of Structural Units for 3L6Y Structure Factors (456 Kb) Retrieve 3L6Y in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3L6Y from S2C, [Save to disk] Re-refined 3l6y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3L6Y in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3L6Y

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3L6Y, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3l6y_B] [3l6y] [3l6y_E] [3l6y_A] [3l6y_F] [3l6y_C] [3l6y_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3L6Y: [ARM ] by SMART

Other resources with information on 3L6Y

Community annotation for 3L6Y at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---