3L75 Oxidoreductase date Dec 28, 2009
title Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
authors L.Huang, E.A.Berry
compound source
Molecule: Mitochondrial Ubiquinol-Cytochrome-C Reductase Co Protein I;
Chain: A, N
Ec: 1.10.2.2
 Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome-C Reductase Co Protein 2;
Chain: B, O
Ec: 1.10.2.2
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Cytochrome B
Chain: C, P
Synonym: Ubiquinol-Cytochrome-C Reductase Complex Cytochrom Subunit, Cytochrome B-C1 Complex Subunit 3, Complex III Sub Complex III Subunit III;
Ec: 1.10.2.2
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Cytochrome C1, Heme Protein
Chain: D, Q
Ec: 1.10.2.2
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Cytochrome B-C1 Complex Subunit 5, Rieske Ironsul Protein, Mitochondrial;
Chain: E, R
Fragment: Unp Residues 77-272
Synonym: Ubiquinol-Cytochrome C Reductase Iron-Sulfur Subun Iron-Sulfur Protein, Risp, Complex III Subunit 5;
Ec: 1.10.2.2
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome C Reductase 14 Protein;
Chain: F, S
Ec: 1.10.2.2
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome C Reductase Ub Binding Protein Qp-C;
Chain: G, T
Ec: 1.10.2.2
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome C Reductase 11 Protein, Complex III Subunit Viii;
Chain: H, U
Ec: 1.10.2.2
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Cytochrome B-C1 Complex Subunit Rieske, Mitochond
Chain: I, V
Fragment: Unp Residues 45-76
Synonym: Ubiquinol-Cytochrome C Reductase Iron-Sulfur Subun Iron-Sulfur Protein, Risp, Complex III Subunit 5;
Ec: 1.10.2.2
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome C Reductase 7. Protein;
Chain: J, W
Ec: 1.10.2.2
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
symmetry Space Group: P 21 21 21
R_factor 0.248 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
172.285 182.141 241.198 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.79 Å
ligand AZI, BOG, CDL, FES, FNM, HEC, HEM, PEE, UNL, UQ enzyme Oxidoreductase E.C.1.10.2.2 BRENDA
note 3L75 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
C, P


E, R


H, U


J, W


N, A, O, B
  • ubiquinol-cytochrome-c reduc...


    • Q, D
  • electron transfer activity


    • S, F


    T, G
  • ubiquinol-cytochrome-c reduc...


    • V, I


    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (661 Kb) [Save to disk]
  • Biological Unit Coordinates (3l75.pdb1.gz) 648 Kb
  • LPC: Ligand-Protein Contacts for 3L75
  • CSU: Contacts of Structural Units for 3L75
  • Structure Factors (1573 Kb)
  • Retrieve 3L75 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L75 from S2C, [Save to disk]
  • Re-refined 3l75 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3L75 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3L75
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L75, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l75_W] [3l75] [3l75_B] [3l75_T] [3l75_G] [3l75_U] [3l75_V] [3l75_D] [3l75_O] [3l75_C] [3l75_J] [3l75_N] [3l75_I] [3l75_A] [3l75_H] [3l75_E] [3l75_F] [3l75_S] [3l75_R] [3l75_P] [3l75_Q]
  • SWISS-PROT database: [D0VX26] [D0VX27] [D0VX28] [D0VX29] [D0VX30] [D0VX31] [D0VX32]
  • Domain organization of [D0VX26_CHICK] [D0VX27_CHICK] [D0VX28_CHICK] [D0VX29_CHICK] [D0VX30_CHICK] [D0VX31_CHICK] [D0VX32_CHICK] by SWISSPFAM
    • Other resources with information on 3L75
  • Community annotation for 3L75 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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