3L7C Crystal Structure of Glycogen Phosphorylase DK4 complex date
authors Tsirkone, V.G., Lamprakis, C., Hayes, J.M., Skamnaki, V., Drakou, C., Zographos, S.E., Leonidas, D.D.
compound source
symmetry
R_factor
R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.93
ligand DK4, LLP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference1-(3-Deoxy-3-fluoro-beta-d-glucopyranosyl) pyrimidine derivatives as inhibitors of glycogen phosphorylase b: Kinetic, crystallographic and modelling studies., Tsirkone VG, Tsoukala E, Lamprakis C, Manta S, Hayes JM, Skamnaki VT, Drakou C, Zographos SE, Komiotis D, Leonidas DD, Bioorg Med Chem. 2010 May 15;18(10):3413-25. Epub 2010 Apr 7. PMID:20430629
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (3l7c.pdb1.gz) 275 Kb
  • LPC: Ligand-Protein Contacts for 3L7C
  • CSU: Contacts of Structural Units for 3L7C
  • Structure Factors (1110 Kb)
  • Retrieve 3L7C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L7C from S2C, [Save to disk]
  • Re-refined 3l7c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3L7C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3L7C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L7C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l7c] [3l7c_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3L7C
  • Community annotation for 3L7C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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