3L89 Viral Protein Protein Binding date Dec 30, 2009
title Human Adenovirus Type 21 Knob In Complex With Domains Scr1 A Cd46 (Membrane Cofactor Protein, Mcp)
authors K.Cupelli, T.Stehle
compound source
Molecule: Fiber Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Fragment: Ad21 Fiber Knob (Unp Residues 123-323)
Engineered: Yes
Organism_scientific: Human Adenovirus 21
Organism_taxid: 32608
Strain: 2145
Gene: 32608, L5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: Membrane Cofactor Protein
Chain: M, N, O, P, Q, R, S, T, U, V, W, X
Fragment: Cd46 Scr1 And Scr2 Domains (Unp Residues 35-160)
Synonym: Trophoblast Leukocyte Common Antigen, Tlx
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: 9606, Cd46, Mcp, Mic10
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_strain: Cho-Lec3281
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbj5
symmetry Space Group: P 1
R_factor 0.204 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.530 107.710 154.100 90.01 90.10 104.70
method X-Ray Diffractionresolution 3.50 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceStructure of adenovirus type 21 knob in complex with CD46 reveals key differences in receptor contacts among species B adenoviruses., Cupelli K, Muller S, Persson BD, Jost M, Arnberg N, Stehle T, J Virol. 2010 Apr;84(7):3189-200. Epub 2010 Jan 13. PMID:20071571
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (580 Kb) [Save to disk]
  • Biological Unit Coordinates (3l89.pdb1.gz) 148 Kb
  • Biological Unit Coordinates (3l89.pdb2.gz) 149 Kb
  • Biological Unit Coordinates (3l89.pdb3.gz) 148 Kb
  • Biological Unit Coordinates (3l89.pdb4.gz) 149 Kb
  • LPC: Ligand-Protein Contacts for 3L89
  • CSU: Contacts of Structural Units for 3L89
  • Structure Factors (598 Kb)
  • Retrieve 3L89 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L89 from S2C, [Save to disk]
  • Re-refined 3l89 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3L89 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3L89
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3L89, from MSDmotif at EBI
  • Fold representative 3l89 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l89_L] [3l89_W] [3l89_D] [3l89_G] [3l89_F] [3l89_X] [3l89_H] [3l89_U] [3l89_O] [3l89_I] [3l89_C] [3l89_M] [3l89_Q] [3l89_R] [3l89_S] [3l89_N] [3l89_J] [3l89_B] [3l89_E] [3l89_V] [3l89_A] [3l89_T] [3l89_P] [3l89_K] [3l89]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3L89: [CCP ] by SMART
  • Other resources with information on 3L89
  • Community annotation for 3L89 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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