3L8J	Protein Binding	date	Dec 31, 2009
title	Crystal Structure Of Ccm3, A Cerebral Cavernous Malformation Critical For Vascular Integrity
authors	X.Li, R.Zhang, H.Zhang, Y.He, W.Ji, W.Min, T.J.Boggon
compound		source
Molecule: Programmed Cell Death Protein 10 Chain: A Synonym: Tf-1 Cell Apoptosis-Related Protein 15, Cerebral C Malformations 3 Protein; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pdcd10, Ccm3, Tfar15 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Modified Pet-32
symmetry	Space Group: P 41 2 2	R_factor 0.278 R_Free 0.293
crystal cell	length a length b length c angle alpha angle beta angle gamma 77.445 77.445 108.629 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.05 Å
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of CCM3, a cerebral cavernous malformation protein critical for vascular integrity., Li X, Zhang R, Zhang H, He Y, Ji W, Min W, Boggon TJ, J Biol Chem. 2010 May 19. PMID:20489202

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (3l8j.pdb1.gz) 139 Kb CSU: Contacts of Structural Units for 3L8J Structure Factors (97 Kb) Retrieve 3L8J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3L8J from S2C, [Save to disk] Re-refined 3l8j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3L8J

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3L8J, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3l8j_A] [3l8j] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3L8J

Community annotation for 3L8J at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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