3L9L	Transferase Transferase Inhibitor	date	Jan 05, 2010
title	Crystal Structure Of Pka With Compound 36
authors	X.Huang
compound		source
Molecule: Camp-Dependent Protein Kinase Catalytic Subunit A Chain: A, B Synonym: Pka C-Alpha Ec: 2.7.11.11 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Prkaca, Pkaca Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
Molecule: Camp-Dependent Protein Kinase Inhibitor Alpha Chain: C, D Fragment: Sequence Database Residues 6-25 Synonym: Camp-Dependent Protein Kinase Inhibitor, Musclebr Isoform, Pki-Alpha; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pkia, Prkacn1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_vector_type: Baculovirus
symmetry	Space Group: C 1 2 1	R_factor 0.219 R_Free 0.262
crystal cell	length a length b length c angle alpha angle beta angle gamma 118.039 114.424 71.807 90.00 125.79 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	L9L, SEP, TPO	enzyme	Transferase E.C.2.7.11.11 BRENDA
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	Azole-based inhibitors of AKT/PKB for the treatment of cancer., Zeng Q, Allen JG, Bourbeau MP, Wang X, Yao G, Tadesse S, Rider JT, Yuan CC, Hong FT, Lee MR, Zhang S, Lofgren JA, Freeman DJ, Yang S, Li C, Tominey E, Huang X, Hoffman D, Yamane HK, Fotsch C, Dominguez C, Hungate R, Zhang X, Bioorg Med Chem Lett. 2010 Mar 1;20(5):1559-64. Epub 2010 Jan 21. PMID:20137943

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk] Biological Unit Coordinates (3l9l.pdb1.gz) 66 Kb Biological Unit Coordinates (3l9l.pdb2.gz) 68 Kb LPC: Ligand-Protein Contacts for 3L9L CSU: Contacts of Structural Units for 3L9L Structure Factors (1527 Kb) Retrieve 3L9L in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3L9L from S2C, [Save to disk] Re-refined 3l9l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3L9L in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3L9L

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3L9L, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3l9l_B] [3l9l] [3l9l_A] [3l9l_D] [3l9l_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3L9L: [S_TK_X] [S_TKc ] by SMART

Other resources with information on 3L9L

Community annotation for 3L9L at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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