3L9L Transferase Transferase Inhibitor date Jan 05, 2010
title Crystal Structure Of Pka With Compound 36
authors X.Huang
compound source
Molecule: Camp-Dependent Protein Kinase Catalytic Subunit A
Chain: A, B
Synonym: Pka C-Alpha
Ec: 2.7.11.11
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prkaca, Pkaca
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus

Molecule: Camp-Dependent Protein Kinase Inhibitor Alpha
Chain: C, D
Fragment: Sequence Database Residues 6-25
Synonym: Camp-Dependent Protein Kinase Inhibitor, Musclebr Isoform, Pki-Alpha;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pkia, Prkacn1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 1 2 1
R_factor 0.219 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.039 114.424 71.807 90.00 125.79 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand L9L, SEP, TPO enzyme Transferase E.C.2.7.11.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Primary referenceAzole-based inhibitors of AKT/PKB for the treatment of cancer., Zeng Q, Allen JG, Bourbeau MP, Wang X, Yao G, Tadesse S, Rider JT, Yuan CC, Hong FT, Lee MR, Zhang S, Lofgren JA, Freeman DJ, Yang S, Li C, Tominey E, Huang X, Hoffman D, Yamane HK, Fotsch C, Dominguez C, Hungate R, Zhang X, Bioorg Med Chem Lett. 2010 Mar 1;20(5):1559-64. Epub 2010 Jan 21. PMID:20137943
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (3l9l.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (3l9l.pdb2.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 3L9L
  • CSU: Contacts of Structural Units for 3L9L
  • Structure Factors (1527 Kb)
  • Retrieve 3L9L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L9L from S2C, [Save to disk]
  • Re-refined 3l9l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3L9L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3L9L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3L9L, from MSDmotif at EBI
  • Fold representative 3l9l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l9l_B] [3l9l] [3l9l_A] [3l9l_D] [3l9l_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3L9L with the sequences similar proteins can be viewed for 3L9L's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3L9L
  • Community annotation for 3L9L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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