3LAJ Transcription Regulator date Jan 06, 2010
title The Structure Of The Intermediate Complex Of The Arginine Re From Mycobacterium Tuberculosis Bound To Its Dna Operator A Arginine.
authors L.T.Cherney, M.M.Cherney, C.R.Garen, M.N.G.James, Mycobacterium Tuberculosis Structural Proteomics Project (Xmtb)
compound source
Molecule: Arginine Repressor
Chain: A, B, C, D, E, F
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 83332
Strain: H37rv
Gene: Ahrc, Argr, Mt1695, Mtcy06h11.22, Rv1657
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgst-1657

Molecule: 5'-D(Tptpgpcpaptpapapcpgpaptpgpcpa
Chain: G, I, K
Fragment: Arg Box Dna Segment, Strand G
Engineered: Yes

Synthetic: Yes

Molecule: 5'-D(Tptpgpcpaptpcpgptptpaptpgpcpa
Chain: H, J, L
Fragment: Arg Box Dna Segment, Strand H
Engineered: Yes

Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.184 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
185.686 106.788 119.080 90.00 121.75 90.00
method X-Ray Diffractionresolution 2.31 Å
ligand ARG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal Structure of the Intermediate Complex of the Arginine Repressor from Mycobacterium tuberculosis Bound with Its DNA Operator Reveals Detailed Mechanism of Arginine Repression., Cherney LT, Cherney MM, Garen CR, James MN, J Mol Biol. 2010 Apr 9. PMID:20382162
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk]
  • Biological Unit Coordinates (3laj.pdb1.gz) 181 Kb
  • LPC: Ligand-Protein Contacts for 3LAJ
  • CSU: Contacts of Structural Units for 3LAJ
  • Structure Factors (630 Kb)
  • Retrieve 3LAJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LAJ from S2C, [Save to disk]
  • Re-refined 3laj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LAJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LAJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LAJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3laj_E] [3laj] [3laj_G] [3laj_K] [3laj_A] [3laj_J] [3laj_L] [3laj_D] [3laj_B] [3laj_F] [3laj_H] [3laj_I] [3laj_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LAJ
  • Community annotation for 3LAJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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