3LAZ Lyase date Jan 07, 2010
title The Crystal Structure Of The N-Terminal Domain Of D- Galactarate Dehydratase From Escherichia Coli Cft073
authors K.Tan, H.Li, J.Bearden, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: D-Galactarate Dehydratase
Chain: A, B
Fragment: N-Terminal Domain, Residues 1-96
Ec: 4.2.1.42
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 199310
Strain: Cft073
Gene: C3883, Yhag
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Ppk1037
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg19
symmetry Space Group: P 41 2 2
R_factor 0.203 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.279 106.279 51.389 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.92 Å
ligand MSE enzyme Lyase E.C.4.2.1.42 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (3laz.pdb1.gz) 65 Kb
  • Biological Unit Coordinates (3laz.pdb2.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 3LAZ
  • CSU: Contacts of Structural Units for 3LAZ
  • Structure Factors (879 Kb)
  • Retrieve 3LAZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LAZ from S2C, [Save to disk]
  • Re-refined 3laz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3LAZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3LAZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LAZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3laz_B] [3laz] [3laz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LAZ: [SAF ] by SMART
    • Other resources with information on 3LAZ
  • Community annotation for 3LAZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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