3LBD	Nuclear Receptor	date	Feb 04, 1998
title	Ligand-Binding Domain Of The Human Retinoic Acid Receptor Ga To 9-Cis Retinoic Acid
authors	B.P.Klaholz, J.P.Renaud, A.Mitschler, D.Moras, Structural Prote Europe (Spine)
compound		source
Molecule: Retinoic Acid Receptor Gamma Chain: A Fragment: Lbd, Ligand-Binding Domain, Residues 178 - 423 Synonym: E Domain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Bl21 Cellular_location: Cytoplasm Gene: Hrargamma Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_plasmid: Pet-15b
symmetry	Space Group: P 41 21 2	R_factor 0.172 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.666 60.666 155.134 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	9CR BindingDB	enzyme
related structures	by homologous chain: 1XAP, 4LBD
Gene Ontology	Chain Function Process Component A
Primary reference	Conformational adaptation of agonists to the human nuclear receptor RAR gamma., Klaholz BP, Renaud JP, Mitschler A, Zusi C, Chambon P, Gronemeyer H, Moras D, Nat Struct Biol 1998 Mar;5(3):199-202. PMID:9501913

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk] Biological Unit Coordinates (3lbd.pdb1.gz) 41 Kb LPC: Ligand-Protein Contacts for 3LBD CSU: Contacts of Structural Units for 3LBD Likely Quarternary Molecular Structure file(s) for 3LBD Retrieve 3LBD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3LBD from S2C, [Save to disk]

View 3LBD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3LBD

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3LBD, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d3lbd__, region [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3lbd_A] [3lbd] SWISS-PROT database: [P13631] Domain organization of [RARG_HUMAN] by SWISSPFAM Domain found in 3LBD: [HOLI ] by SMART

Other resources with information on 3LBD

Community annotation for 3LBD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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