3LCP	Protein Binding	date	Jan 11, 2010
title	Crystal Structure Of The Carbohydrate Recognition Domain Of Complex With Mcfd2
authors	E.Wigren, J.M.Bourhis, I.Kursula, J.E.Guy, Y.Lindqvist
compound		source
Molecule: Protein Ergic-53 Chain: A, B Fragment: Unp Residues 32-277, Carbohydrate Recognition Dom Synonym: Er-Golgi Intermediate Compartment 53 Kda Protein, Mannose-Binding 1, Gp58, Intracellular Mannose-Specific Lec Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ergic53, F5f8d, Lman1, Lman1 (Amino Acids 32-277) Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
Molecule: Multiple Coagulation Factor Deficiency Protein 2 Chain: C, D Fragment: Unp Residues 58-146, 2 Ef-Hand Domains Synonym: Neural Stem Cell-Derived Neuronal Survival Protein Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mcfd2, Mcfd2 (Amino Acids 58-146), Sdnsf Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 61	R_factor 0.196 R_Free 0.247
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.602 58.602 396.870 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.45 Å
ligand	CA	enzyme
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	Crystal structure of the LMAN1-CRD/MCFD2 transport receptor complex provides insight into combined deficiency of factor V and factor VIII., Wigren E, Bourhis JM, Kursula I, Guy JE, Lindqvist Y, FEBS Lett. 2010 Mar 5;584(5):878-82. Epub 2010 Feb 9. PMID:20138881

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk] Biological Unit Coordinates (3lcp.pdb1.gz) 50 Kb Biological Unit Coordinates (3lcp.pdb2.gz) 50 Kb LPC: Ligand-Protein Contacts for 3LCP CSU: Contacts of Structural Units for 3LCP Structure Factors (1425 Kb) Retrieve 3LCP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3LCP from S2C, [Save to disk] Re-refined 3lcp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3LCP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3LCP

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3LCP, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3lcp_B] [3lcp_A] [3lcp_D] [3lcp_C] [3lcp] SWISS-PROT database: [P49257] [Q8NI22] Domain organization of [LMAN1_HUMAN] [MCFD2_HUMAN] by SWISSPFAM

Other resources with information on 3LCP

Community annotation for 3LCP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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