3LE4 Nuclear Protein date Jan 14, 2010
title Crystal Structure Of The Dgcr8 Dimerization Domain
authors R.Senturia, D.Cascio, M.Sawaya, F.Guo
compound source
Molecule: Microprocessor Complex Subunit Dgcr8
Chain: A
Fragment: Dimerization Domain (Unp Residues 275 To 353)
Synonym: Digeorge Syndrome Critical Region 8
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dgcr8, C22orf12, Dgcrk6, Lp4941
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.181 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.952 39.952 80.626 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
note 3LE4 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the dimerization domain of DiGeorge critical region 8., Senturia R, Faller M, Yin S, Loo JA, Cascio D, Sawaya MR, Hwang D, Clubb RT, Guo F, Protein Sci. 2010 Jul;19(7):1354-65. PMID:20506313
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (3le4.pdb1.gz) 19 Kb
  • CSU: Contacts of Structural Units for 3LE4
  • Structure Factors (107 Kb)
  • Retrieve 3LE4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LE4 from S2C, [Save to disk]
  • Re-refined 3le4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3LE4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3LE4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LE4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3le4_A] [3le4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LE4: [WW ] by SMART
    • Other resources with information on 3LE4
  • Community annotation for 3LE4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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