3LE9 Hydrolase date Jan 14, 2010
title Crystal Structure Of The Catalytic Domain Of Tace With Indaz Phenyl-Hydantoin Inhibitor
authors P.Orth
compound source
Molecule: Disintegrin And Metalloproteinase Domain-Containi 17;
Chain: A, B
Fragment: Residues 215-476
Synonym: Adam 17, Tnf-Alpha-Converting Enzyme, Tnf-Alpha Co Snake Venom-Like Protease;
Ec: 3.4.24.86
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adam17, Csvp, Tace
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 21 21 21
R_factor 0.205 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.419 75.490 102.917 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand 727, IPA, ZN enzyme Hydrolase E.C.3.4.24.86 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBiaryl substituted hydantoin compounds as TACE inhibitors., Yu W, Tong L, Kim SH, Wong MK, Chen L, Yang DY, Shankar BB, Lavey BJ, Zhou G, Kosinski A, Rizvi R, Li D, Feltz RJ, Piwinski JJ, Rosner KE, Shih NY, Siddiqui MA, Guo Z, Orth P, Shah H, Sun J, Umland S, Lundell DJ, Niu X, Kozlowski JA, Bioorg Med Chem Lett. 2010 Sep 1;20(17):5286-9. Epub 2010 Jul 1. PMID:20663669
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (3le9.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (3le9.pdb2.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 3LE9
  • CSU: Contacts of Structural Units for 3LE9
  • Structure Factors (1158 Kb)
  • Retrieve 3LE9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LE9 from S2C, [Save to disk]
  • Re-refined 3le9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LE9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LE9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3LE9, from MSDmotif at EBI
  • Fold representative 3le9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3le9_A] [3le9] [3le9_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3LE9 with the sequences similar proteins can be viewed for 3LE9's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3LE9
  • Community annotation for 3LE9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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