3LEA Hydrolase date Jan 14, 2010
title Crystal Structure Of The Catalytic Domain Of Tace With Isoin Biphenyl-Hydantoin Inhibitor
authors P.Orth
compound source
Molecule: Disintegrin And Metalloproteinase Domain-Containi 17;
Chain: A, B
Fragment: Residues 215-476
Synonym: Adam 17, Tnf-Alpha-Converting Enzyme, Tnf-Alpha Co Snake Venom-Like Protease;
Ec: 3.4.24.86
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adam17, Csvp, Tace
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 21 21 2
R_factor 0.176 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.481 112.540 51.272 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand IPA, Z93, ZN enzyme Hydrolase E.C.3.4.24.86 BRENDA
Primary referenceBiaryl substituted hydantoin compounds as TACE inhibitors., Yu W, Tong L, Kim SH, Wong MK, Chen L, Yang DY, Shankar BB, Lavey BJ, Zhou G, Kosinski A, Rizvi R, Li D, Feltz RJ, Piwinski JJ, Rosner KE, Shih NY, Siddiqui MA, Guo Z, Orth P, Shah H, Sun J, Umland S, Lundell DJ, Niu X, Kozlowski JA, Bioorg Med Chem Lett. 2010 Sep 1;20(17):5286-9. Epub 2010 Jul 1. PMID:20663669
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (3lea.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (3lea.pdb2.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 3LEA
  • CSU: Contacts of Structural Units for 3LEA
  • Structure Factors (1067 Kb)
  • Retrieve 3LEA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LEA from S2C, [Save to disk]
  • Re-refined 3lea structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LEA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LEA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3LEA, from MSDmotif at EBI
  • Fold representative 3lea from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lea_A] [3lea] [3lea_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 3LEA with the sequences similar proteins can be viewed for 3LEA's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3LEA
  • Community annotation for 3LEA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science