3LEL Structural Insight into the Sequence-Dependence of Nucleosome Positioning date
authors Wu, B., Vasudevan, D., Davey, C.A.
compound source
symmetry
R_factor
R_Free 0.30033
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.95
ligand MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, O, K, E


F, P, B, L


N, H, D, R


Q, M, C, G


Primary referenceStructural insight into the sequence dependence of nucleosome positioning., Wu B, Mohideen K, Vasudevan D, Davey CA, Structure. 2010 Mar 14;18(4):528-36. PMID:20399189
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (490 Kb) [Save to disk]
  • Biological Unit Coordinates (3lel.pdb1.gz) 242 Kb
  • Biological Unit Coordinates (3lel.pdb2.gz) 243 Kb
  • LPC: Ligand-Protein Contacts for 3LEL
  • CSU: Contacts of Structural Units for 3LEL
  • Structure Factors (1255 Kb)
  • Retrieve 3LEL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LEL from S2C, [Save to disk]
  • Re-refined 3lel structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3LEL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3LEL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3LEL, from MSDmotif at EBI
  • Fold representative 3lel from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lel_O] [3lel_R] [3lel_C] [3lel_P] [3lel_E] [3lel_J] [3lel_K] [3lel_D] [3lel_S] [3lel_I] [3lel_G] [3lel_N] [3lel_L] [3lel_F] [3lel_B] [3lel] [3lel_Q] [3lel_T] [3lel_M] [3lel_A] [3lel_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3LEL: [H2A] [H2B] [H3] [H4 ] by SMART
    • Other resources with information on 3LEL
  • Community annotation for 3LEL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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