3LEY	Immune System	date	Jan 15, 2010
title	2f5 Epitope Scaffold Elicited Anti-Hiv-1 Monoclonal Antibody Complex With Hiv-1 Gp41
authors	G.Ofek, F.J.Guenaga, W.R.Schief, J.Skinner, D.Baker, R.Wyatt, P.D.
compound		source
Molecule: 6a7 Antibody Heavy Chain Chain: H		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Strain: Balbc Cell_line: Myeloma Cell Line Fo Cell: Hybridoma
Molecule: 6a7 Antibody Light Chain Chain: L		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Strain: Balbc Cell_line: Myeloma Cell Line Fo Cell: Hybridoma
Molecule: Envelope Glycoprotein Gp41 Chain: P Engineered: Yes		Synthetic: Yes Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Other_details: Hiv-1 Gp41 Peptide
symmetry	Space Group: P 1 21 1	R_factor 0.177 R_Free 0.215
crystal cell	length a length b length c angle alpha angle beta angle gamma 36.249 80.160 72.139 90.00 97.07 90.00
method	X-Ray Diffraction	resolution	1.99 Å
ligand	NH2, ZN	enzyme
Primary reference	Elicitation of structure-specific antibodies by epitope scaffolds., Ofek G, Guenaga FJ, Schief WR, Skinner J, Baker D, Wyatt R, Kwong PD, Proc Natl Acad Sci U S A. 2010 Oct 19;107(42):17880-7. Epub 2010 Sep 27. PMID:20876137

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk] Biological Unit Coordinates (3ley.pdb1.gz) 150 Kb LPC: Ligand-Protein Contacts for 3LEY CSU: Contacts of Structural Units for 3LEY Structure Factors (343 Kb) Retrieve 3LEY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3LEY from S2C, [Save to disk] Re-refined 3ley structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3LEY in 3D

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Visual 3D analysis of 3LEY

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3LEY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ley_L] [3ley_P] [3ley_H] [3ley] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3LEY: [IG_like] [IGv ] by SMART

Other resources with information on 3LEY

Community annotation for 3LEY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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