3LFN Transferase date Jan 18, 2010
title Crystal Structure Of Cdk2 With Sar57, An Aminoindazole Type
authors M.K.Dreyer, K.U.Wendt, S.Schimanski-Breves, P.Loenze
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: P33 Protein Kinase
Ec: 2.7.11.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 21
R_factor 0.184 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.337 72.066 71.439 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.28 Å
ligand A27 enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRational design of potent GSK3beta inhibitors with selectivity for Cdk1 and Cdk2., Lesuisse D, Dutruc-Rosset G, Tiraboschi G, Dreyer MK, Maignan S, Chevalier A, Halley F, Bertrand P, Burgevin MC, Quarteronet D, Rooney T, Bioorg Med Chem Lett. 2010 Jan 25. PMID:20167481
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (3lfn.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 3LFN
  • CSU: Contacts of Structural Units for 3LFN
  • Structure Factors (263 Kb)
  • Retrieve 3LFN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LFN from S2C, [Save to disk]
  • Re-refined 3lfn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LFN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LFN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LFN, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lfn_A] [3lfn]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LFN: [S_TKc ] by SMART
  • Other resources with information on 3LFN
  • Community annotation for 3LFN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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