3LHG Hydrolase date Jan 22, 2010
title Bace1 In Complex With The Aminohydantoin Compound 4g
authors A.M.Olland
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Bace-1 Catalytic Domain, Residues 46-454
Synonym: Beta-Site Amyloid Precursor Protein Cleaving Enzym Site App Cleaving Enzyme 1, Membrane-Associated Aspartic Pr Memapsin-2, Aspartyl Protease 2, Asp 2, Asp2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1, Bace, Kiaa1149
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.182 R_Free 0.233
length a length b length c angle alpha angle beta angle gamma
72.909 104.632 50.260 90.00 94.89 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand Z81 BindingDB enzyme Hydrolase E.C. BRENDA

Primary referencePyridinyl aminohydantoins as small molecule BACE1 inhibitors., Zhou P, Li Y, Fan Y, Wang Z, Chopra R, Olland A, Hu Y, Magolda RL, Pangalos M, Reinhart PH, Turner MJ, Bard J, Malamas MS, Robichaud AJ, Bioorg Med Chem Lett. 2010 Apr 1;20(7):2326-9. Epub 2010 Feb 12. PMID:20202842
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (3lhg.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 3LHG
  • CSU: Contacts of Structural Units for 3LHG
  • Structure Factors (172 Kb)
  • Retrieve 3LHG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LHG from S2C, [Save to disk]
  • Re-refined 3lhg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LHG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LHG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LHG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lhg] [3lhg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LHG
  • Community annotation for 3LHG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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