3LHR Transcription Regulator date Jan 22, 2010
title Crystal Structure Of The Scan Domain From Human Znf24
authors B.F.Volkman, F.C.Peterson, C.A.Bingman, G.N.Phillips Jr., Center Eukaryotic Structural Genomics (Cesg)
compound source
Molecule: Zinc Finger Protein 24
Chain: A, B
Fragment: Scan Box Domain
Synonym: Zinc Finger Protein 191, Zinc Finger Protein Kox17 Acid Suppression Protein A, Rsg-A, Zinc Finger And Scan Dom Containing Protein 3;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kox17, Znf191, Znf24, Zscan3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Sg13009[Prep4]
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe30
symmetry Space Group: P 21 21 21
R_factor 0.182 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.055 50.029 91.301 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CL, EMC, MG, PEG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (3lhr.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 3LHR
  • CSU: Contacts of Structural Units for 3LHR
  • Structure Factors (407 Kb)
  • Retrieve 3LHR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LHR from S2C, [Save to disk]
  • Re-refined 3lhr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3LHR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3LHR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LHR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lhr_B] [3lhr] [3lhr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LHR: [SCAN ] by SMART
    • Other resources with information on 3LHR
  • Community annotation for 3LHR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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