3LIL Hydrolase Hydrolase Inhibitor date Jan 25, 2010
title Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
authors E.A.Stura, V.Dive, L.Devel, B.Czarny, L.Vera, F.Beau
compound source
Molecule: Macrophage Metalloelastase
Chain: A
Fragment: Mmp-12 Catalitic Subunit (Residues 106-263)
Synonym: Mme, Matrix Metalloproteinase-12, Mmp-12, Macropha Elastase, Me, Hme;
Ec: 3.4.24.65
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mmp12, Hme
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Pet24a
symmetry Space Group: P 21 21 2
R_factor 0.154 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.782 62.667 37.648 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CA, EEA, HAE, ZN enzyme Hydrolase E.C.3.4.24.65 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInsights from selective non-phosphinic inhibitors of MMP-12 tailored to fit with an S1' loop canonical conformation., Devel L, Garcia S, Czarny B, Beau F, LaJeunesse E, Vera L, Georgiadis D, Stura E, Dive V, J Biol Chem. 2010 Nov 12;285(46):35900-9. Epub 2010 Sep 3. PMID:20817735
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (3lil.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 3LIL
  • CSU: Contacts of Structural Units for 3LIL
  • Structure Factors (221 Kb)
  • Retrieve 3LIL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LIL from S2C, [Save to disk]
  • Re-refined 3lil structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LIL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LIL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LIL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lil] [3lil_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LIL: [ZnMc ] by SMART
  • Other resources with information on 3LIL
  • Community annotation for 3LIL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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