3LJ5	Viral Protein	date	Jan 25, 2010
title	Full Length Bacteriophage P22 Portal Protein
authors	A.S.Olia, G.Cingolani
compound		source
Molecule: Portal Protein Chain: A, B, C, D, E, F, G, H, I, J, K, L Fragment: Unp Residues 1-725 Synonym: Protein Gp1 Engineered: Yes		Organism_scientific: Enterobacteria Phage P22 Organism_common: Bacteriophage P22 Organism_taxid: 10754 Gene: 1, Gp1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-22
symmetry	Space Group: I 4	R_factor 0.187 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 408.949 408.949 260.009 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	7.50 Å
Gene Ontology	Chain Function Process Component F, A, J, K, E, B, H, C, D, I, G, L
Primary reference	Three-dimensional structure of a viral genome-delivery portal vertex., Olia AS, Prevelige PE Jr, Johnson JE, Cingolani G, Nat Struct Mol Biol. 2011 May;18(5):597-603. Epub 2011 Apr 17. PMID:21499245

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2649 Kb) [Save to disk] Biological Unit Coordinates (3lj5.pdb1.gz) 2634 Kb CSU: Contacts of Structural Units for 3LJ5 Structure Factors (424 Kb) Retrieve 3LJ5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3LJ5 from S2C, [Save to disk] Re-refined 3lj5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3LJ5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3LJ5

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3LJ5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3lj5_H] [3lj5_G] [3lj5_A] [3lj5_E] [3lj5_J] [3lj5_L] [3lj5_K] [3lj5_D] [3lj5_F] [3lj5] [3lj5_B] [3lj5_C] [3lj5_I] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3LJ5

Community annotation for 3LJ5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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