3LJ5 Viral Protein date Jan 25, 2010
title Full Length Bacteriophage P22 Portal Protein
authors A.S.Olia, G.Cingolani
compound source
Molecule: Portal Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Fragment: Unp Residues 1-725
Synonym: Protein Gp1
Engineered: Yes
Organism_scientific: Enterobacteria Phage P22
Organism_common: Bacteriophage P22
Organism_taxid: 10754
Gene: 1, Gp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-22
symmetry Space Group: I 4
R_factor 0.187 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
408.949 408.949 260.009 90.00 90.00 90.00
method X-Ray Diffractionresolution 7.50 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceThree-dimensional structure of a viral genome-delivery portal vertex., Olia AS, Prevelige PE Jr, Johnson JE, Cingolani G, Nat Struct Mol Biol. 2011 May;18(5):597-603. Epub 2011 Apr 17. PMID:21499245
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2703 Kb) [Save to disk]
  • Biological Unit Coordinates (3lj5.pdb1.gz) 2686 Kb
  • CSU: Contacts of Structural Units for 3LJ5
  • Structure Factors (424 Kb)
  • Retrieve 3LJ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LJ5 from S2C, [Save to disk]
  • Re-refined 3lj5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LJ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LJ5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3LJ5, from MSDmotif at EBI
  • Fold representative 3lj5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lj5_H] [3lj5_G] [3lj5_A] [3lj5_E] [3lj5_J] [3lj5_L] [3lj5_K] [3lj5_D] [3lj5_F] [3lj5] [3lj5_B] [3lj5_C] [3lj5_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LJ5
  • Community annotation for 3LJ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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