3LK5 Transferase date Jan 27, 2010
title Crystal Structure Of Putative Geranylgeranyl Pyrophosphate S From Corynebacterium Glutamicum
authors V.N.Malashkevich, R.Toro, Y.Patskovsky, J.M.Sauder, S.K.Burley, S New York Sgx Research Center For Structural Genomics (Nysgx
compound source
Molecule: Geranylgeranyl Pyrophosphate Synthase
Chain: A
Ec: 2.5.1.1
Engineered: Yes
 Organism_scientific: Corynebacterium Glutamicum
Organism_taxid: 1718
Strain: Atcc 13032
Gene: Cgl2172
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Codon+Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry Space Group: P 31 2 1
R_factor 0.168 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
125.434 125.434 52.067 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand GOL, MSE enzyme Transferase E.C.2.5.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (3lk5.pdb1.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 3LK5
  • CSU: Contacts of Structural Units for 3LK5
  • Structure Factors (528 Kb)
  • Retrieve 3LK5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LK5 from S2C, [Save to disk]
  • Re-refined 3lk5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3LK5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3LK5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LK5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lk5] [3lk5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3LK5
  • Community annotation for 3LK5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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