3LKH	Transferase	date	Jan 27, 2010
title	Inhibitors Of Hepatitis C Virus Polymerase: Synthesis And Characterization Of Novel 6-Fluoro-N-[2-Hydroxy-1(S)-Benzam
authors	C.A.Lesburg
compound		source
Molecule: Rna-Directed Rna Polymerase Chain: A, B Synonym: Ns5b, P68 Ec: 2.7.7.48 Engineered: Yes		Organism_scientific: Hepatitis C Virus Organism_common: Hcv Organism_taxid: 11103 Gene: Ns5b Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.184 R_Free 0.241
crystal cell	length a length b length c angle alpha angle beta angle gamma 88.700 107.068 134.243 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.05 Å
ligand	LT6	enzyme	Transferase E.C.2.7.7.48 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Inhibitors of hepatitis C virus polymerase: Synthesis and characterization of novel 2-oxy-6-fluoro-N-((S)-1-hydroxy-3-phenylpropan-2-yl)-benzamides., Cheng CC, Shipps GW Jr, Yang Z, Kawahata N, Lesburg CA, Duca JS, Bandouveres J, Bracken JD, Jiang CK, Agrawal S, Ferrari E, Huang HC, Bioorg Med Chem Lett. 2010 Apr 1;20(7):2119-2124. Epub 2010 Feb 18. PMID:20219368

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (204 Kb) [Save to disk] Biological Unit Coordinates (3lkh.pdb1.gz) 102 Kb Biological Unit Coordinates (3lkh.pdb2.gz) 101 Kb LPC: Ligand-Protein Contacts for 3LKH CSU: Contacts of Structural Units for 3LKH Structure Factors (1763 Kb) Retrieve 3LKH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3LKH from S2C, [Save to disk] Re-refined 3lkh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3LKH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3LKH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3LKH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3lkh] [3lkh_A] [3lkh_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3LKH

Community annotation for 3LKH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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