4O38 Transferase date Dec 18, 2013
title Crystal Structure Of The Human Cyclin G Associated Kinase (G
authors R.Zhang, C.Hatzos-Skintges, A.Weger, A.Chaikuad, J.Eswaran, O.Fed O.King, F.Von Delft, C.Bountra, C.H.Arrowsmith, J.Weigelt, A.Edw S.Knapp, A.Joachimiak, Midwest Center For Structural Genomics Structural Genomics Consortium (Sgc)
compound source
Molecule: Cyclin-G-Associated Kinase
Chain: A, B
Fragment: Kinase Domain (11-347)
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gak
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 32 2 1
R_factor 0.165 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.425 103.425 131.951 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand GOL, MSE, SIN enzyme Transferase E.C.2.7.11.1 BRENDA
note 4O38 supersedes 3LL6
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (4o38.pdb1.gz) 188 Kb
  • LPC: Ligand-Protein Contacts for 4O38
  • CSU: Contacts of Structural Units for 4O38
  • Structure Factors (897 Kb)
  • Retrieve 4O38 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4O38 from S2C, [Save to disk]
  • Re-refined 4o38 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4O38 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4O38
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4o38 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4o38_B] [4o38_A] [4o38]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Alignments of the sequence of 4O38 with the sequences similar proteins can be viewed for 4O38's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 4O38
  • Community annotation for 4O38 at PDBWiki (http://pdbwiki.org)

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