4O38 Transferase date Dec 18, 2013
title Crystal Structure Of The Human Cyclin G Associated Kinase (G
authors R.Zhang, C.Hatzos-Skintges, A.Weger, A.Chaikuad, J.Eswaran, O.Fed O.King, F.Von Delft, C.Bountra, C.H.Arrowsmith, J.Weigelt, A.Edw S.Knapp, A.Joachimiak, Midwest Center For Structural Genomics Structural Genomics Consortium (Sgc)
compound source
Molecule: Cyclin-G-Associated Kinase
Chain: A, B
Fragment: Kinase Domain (11-347)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gak
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 32 2 1
R_factor 0.165 R_Free 0.195
length a length b length c angle alpha angle beta angle gamma
103.425 103.425 131.951 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand GOL, MSE, SIN enzyme Transferase E.C. BRENDA
note 4O38 supersedes 3LL6
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (4o38.pdb1.gz) 188 Kb
  • LPC: Ligand-Protein Contacts for 4O38
  • CSU: Contacts of Structural Units for 4O38
  • Structure Factors (897 Kb)
  • Retrieve 4O38 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4O38 from S2C, [Save to disk]
  • Re-refined 4o38 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4O38 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4O38
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4O38, from MSDmotif at EBI
  • Fold representative 4o38 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4o38_B] [4o38_A] [4o38]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4O38: [STYKc ] by SMART
  • Other resources with information on 4O38
  • Community annotation for 4O38 at PDBWiki (http://pdbwiki.org)

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