3LMS Hydrolase Hydrolase Inhibitor date Feb 01, 2010
title Structure Of Human Activated Thrombin-Activatable Fibrinolys Inhibitor, Tafia, In Complex With Tick-Derived Funnelin Inh Tci.
authors L.Sanglas, J.L.Arolas, Z.Valnickova, F.X.Aviles, J.J.Enghild, F.X Ruth
compound source
Molecule: Carboxypeptidase B2
Chain: A
Synonym: Tafi, Carboxypeptidase U, Cpu, Thrombin-Activable Fibrinolysis Inhibitor, Plasma Carboxypeptidase B, Pcpb;
Ec: 3.4.17.20
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood Serum

Molecule: Carboxypeptidase Inhibitor
Chain: B
Synonym: Tick-Derived Funnelin Inhibitor, Tci
Engineered: Yes

Organism_scientific: Rhipicephalus Bursa
Organism_taxid: 67831
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbat-4-Ompa
symmetry Space Group: P 31 2 1
R_factor 0.185 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
157.180 157.180 57.070 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand CA, CL, GLY, GOL, K, ZN enzyme Hydrolase E.C.3.4.17.20 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceInsights into the molecular inactivation mechanism of human activated thrombin-activatable fibrinolysis inhibitor, TAFIa., Sanglas L, Arolas JL, Valnickova Z, Aviles FX, Enghild JJ, Gomis-Ruth FX, J Thromb Haemost. 2010 Jan 17. PMID:20088943
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (3lms.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 3LMS
  • CSU: Contacts of Structural Units for 3LMS
  • Structure Factors (486 Kb)
  • Retrieve 3LMS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LMS from S2C, [Save to disk]
  • Re-refined 3lms structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LMS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LMS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LMS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lms_A] [3lms_B] [3lms]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LMS: [Zn_pept ] by SMART
  • Other resources with information on 3LMS
  • Community annotation for 3LMS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
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