OCA Atlas for 3LMV

3LMV

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

EPE, SO3

enzyme

Gene

PF11

Gene
Ontology

Chain	Function	Process	Component
B, D, A, F, C, E	aminoacyl-tRNA editing activ... D-aminoacyl-tRNA deacylase a... D-tyrosyl-tRNA(Tyr) deacylas... Gly-tRNA(Ala) hydrolase acti...

Primary reference

Structure of D-tyrosyl-tRNATyr deacylase using home-source Cu Kalpha and moderate-quality iodide-SAD data: structural polymorphism and HEPES-bound enzyme states., Yogavel M, Khan S, Bhatt TK, Sharma A, Acta Crystallogr D Biol Crystallogr. 2010 May;66(Pt 5):584-92. Epub 2010, Apr 21. PMID:20445234

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]

Biological Unit Coordinates (3lmv.pdb1.gz) 50 Kb

Biological Unit Coordinates (3lmv.pdb2.gz) 50 Kb

Biological Unit Coordinates (3lmv.pdb3.gz) 45 Kb

LPC: Ligand-Protein Contacts for 3LMV

CSU: Contacts of Structural Units for 3LMV

Structure Factors (147 Kb)

Retrieve 3LMV in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3LMV from S2C, [Save to disk]

Re-refined 3lmv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3LMV in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3lmv] [3lmv_A] [3lmv_B] [3lmv_C] [3lmv_D] [3lmv_E] [3lmv_F]

SWISS-PROT database:

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