3LPY	Isomerase	date	Feb 07, 2010
title	Crystal Structure Of The Rrm Domain Of Cyp33
authors	Z.Wang, D.J.Patel
compound		source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase E Chain: A, B Fragment: N-Terminal Rrm Domain Synonym: Ppiase E, Rotamase E, Cyclophilin E, Cyclophilin-3 Ec: 5.2.1.8 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ppie, Cyp33 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Prsfduet-1
symmetry	Space Group: P 31	R_factor 0.216 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 59.833 59.833 50.909 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	EPE, SO4	enzyme	Isomerase E.C.5.2.1.8 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Pro Isomerization in MLL1 PHD3-Bromo Cassette Connects H3K4me Readout to CyP33 and HDAC-Mediated Repression., Wang Z, Song J, Milne TA, Wang GG, Li H, Allis CD, Patel DJ, Cell. 2010 Jun 25;141(7):1183-1194. Epub 2010 Jun 10. PMID:20541251

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk] Biological Unit Coordinates (3lpy.pdb1.gz) 14 Kb Biological Unit Coordinates (3lpy.pdb2.gz) 15 Kb LPC: Ligand-Protein Contacts for 3LPY CSU: Contacts of Structural Units for 3LPY Structure Factors (163 Kb) Retrieve 3LPY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3LPY from S2C, [Save to disk] Re-refined 3lpy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3LPY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3LPY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3LPY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3lpy_B] [3lpy_A] [3lpy] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3LPY: [RRM ] by SMART

Other resources with information on 3LPY

Community annotation for 3LPY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---