3LQ9 Signaling Protein date Feb 08, 2010
title Crystal Structure Of Human Redd1, A Hypoxia-Induced Regulato
authors S.Vega-Rubin-De-Celis, Z.Abdallah, J.Brugarolas, X.Zhang
compound source
Molecule: Dna-Damage-Inducible Transcript 4 Protein
Chain: A, B
Fragment: C-Terminal Functional Domain
Synonym: Protein Regulated In Development And Dna Damage Re Redd-1, Hif-1 Responsive Protein Rtp801;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ddit4, Redd1, Rtp801
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet28 With A His6-Sumo
symmetry Space Group: P 1
R_factor 0.177 R_Free 0.214
length a length b length c angle alpha angle beta angle gamma
33.331 36.586 47.970 77.56 89.08 86.18
method X-Ray Diffractionresolution 2.00 Å
ligand MSE enzyme
note 3LQ9 is a representative structure
A, B

Primary referenceStructural Analysis and Functional Implications of the Negative mTORC1 Regulator REDD1 (,)., Vega-Rubin-de-Celis S, Abdallah Z, Kinch L, Grishin NV, Brugarolas J, Zhang X, Biochemistry. 2010 Mar 2. PMID:20166753
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (3lq9.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (3lq9.pdb2.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 3LQ9
  • CSU: Contacts of Structural Units for 3LQ9
  • Structure Factors (384 Kb)
  • Retrieve 3LQ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LQ9 from S2C, [Save to disk]
  • Re-refined 3lq9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LQ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LQ9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3LQ9, from MSDmotif at EBI
  • Fold representative 3lq9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lq9_A] [3lq9_B] [3lq9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LQ9
  • Community annotation for 3LQ9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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