3LRA Membrane Protein date Feb 10, 2010
title Structural Basis For Assembling A Human Tripartite Complex D Mals3
authors X.Yang, X.Xie, Y.Shen, J.Long
compound source
Molecule: Disks Large Homolog 1, Maguk P55 Subfamily Member Protein Lin-7 Homolog C;
Chain: A
Fragment: L27 Domain, L27 12 Domain
Synonym: Dlg1, Synapse-Associated Protein 97, Sap-97, Sap97 Mpp7, Mals-3, Lin-7c, Mammalian Lin-Seven Protein 3, Verteb Homolog 3, Veli-3;
Engineered: Yes
Other_details: Structural Basis For Assembling A Tripartite Dlg1-Mpp7-Mals3
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: L27 Domains Of Dlg1, Mpp7 And Mals3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a Vector (Novagen)
symmetry Space Group: P 62 2 2
R_factor 0.255 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
153.190 153.190 58.903 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.95 Å
Primary referenceStructural basis for tandem L27 domain-mediated polymerization., Yang X, Xie X, Chen L, Zhou H, Wang Z, Zhao W, Tian R, Zhang R, Tian C, Long J, Shen Y, FASEB J. 2010 Aug 11. PMID:20702775
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (3lra.pdb1.gz) 43 Kb
  • CSU: Contacts of Structural Units for 3LRA
  • Structure Factors (97 Kb)
  • Retrieve 3LRA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LRA from S2C, [Save to disk]
  • Re-refined 3lra structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LRA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LRA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3LRA, from MSDmotif at EBI
  • Fold representative 3lra from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lra_A] [3lra]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LRA: [L27 ] by SMART
  • Other resources with information on 3LRA
  • Community annotation for 3LRA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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