3LRP Protein Transport date Feb 11, 2010
title Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation
authors W.J.Cook, D.Chattopadhyay
compound source
Molecule: Adp-Ribosylation Factor 1
Chain: A
Engineered: Yes
 Organism_scientific: Plasmodium Falciparum
Organism_taxid: 5833
Gene: Arf1, Arf, Plarf
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-3x
symmetry Space Group: C 2 2 21
R_factor 0.189 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.732 147.280 64.229 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand GDP, MG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of Plasmodium falciparum ADP-ribosylation factor 1., Cook WJ, Smith CD, Senkovich O, Holder AA, Chattopadhyay D, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Nov 1;66(Pt, 11):1426-31. Epub 2010 Oct 27. PMID:21045287
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (3lrp.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (3lrp.pdb2.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 3LRP
  • CSU: Contacts of Structural Units for 3LRP
  • Structure Factors (54 Kb)
  • Retrieve 3LRP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LRP from S2C, [Save to disk]
  • Re-refined 3lrp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3LRP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3LRP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LRP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lrp_A] [3lrp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LRP: [ARF ] by SMART
    • Other resources with information on 3LRP
  • Community annotation for 3LRP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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