3LRQ Ligase date Feb 11, 2010
title Crystal Structure Of The U-Box Domain Of Human Ubiquitin- Protein Ligase (E3), Northeast Structural Genomics Consortium Target Hr4604d.
authors A.Kuzin, Y.Chen, J.Seetharaman, M.Mao, R.Xiao, C.Ciccosanti, R.Shastry, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: E3 Ubiquitin-Protein Ligase Trim37
Chain: A, B, C, D
Fragment: Residues 1-90
Synonym: Tripartite Motif-Containing Protein 37, Mulibrey Nanism Protein;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kiaa0898, Mul, Pob1, Trim37
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)+ Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 14-15c
symmetry Space Group: P 1 21 1
R_factor 0.190 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.544 34.922 86.709 90.00 90.78 90.00
method X-Ray Diffractionresolution 2.29 Å
ligand MSE, ZN enzyme Ligase E.C.6.3.2 BRENDA
note 3LRQ is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (3lrq.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (3lrq.pdb2.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3LRQ
  • CSU: Contacts of Structural Units for 3LRQ
  • Structure Factors (441 Kb)
  • Retrieve 3LRQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LRQ from S2C, [Save to disk]
  • Re-refined 3lrq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LRQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LRQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3LRQ, from MSDmotif at EBI
  • Fold representative 3lrq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lrq_A] [3lrq_C] [3lrq_B] [3lrq_D] [3lrq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LRQ: [RING ] by SMART
  • Other resources with information on 3LRQ
  • Community annotation for 3LRQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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