3LU8 Transport Protein date Feb 17, 2010
title Human Serum Albumin In Complex With Compound 3
authors D.Buttar, N.Colclough, S.Gerhardt, P.A.Macfaul, S.D.Phillips, A.P P.Whittamore, K.Tam, K.Maskos, S.Steinbacher, H.Steuber
compound source
Molecule: Serum Albumin
Chain: A, B
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor 0.245 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.779 59.031 96.177 75.42 88.06 76.91
method X-Ray Diffractionresolution 2.60 Å
ligand IQX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA combined spectroscopic and crystallographic approach to probing drug-human serum albumin interactions., Buttar D, Colclough N, Gerhardt S, MacFaul PA, Phillips SD, Plowright A, Whittamore P, Tam K, Maskos K, Steinbacher S, Steuber H, Bioorg Med Chem. 2010 Nov 1;18(21):7486-96. Epub 2010 Sep 24. PMID:20869876
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (191 Kb) [Save to disk]
  • Biological Unit Coordinates (3lu8.pdb1.gz) 95 Kb
  • Biological Unit Coordinates (3lu8.pdb2.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 3LU8
  • CSU: Contacts of Structural Units for 3LU8
  • Structure Factors (259 Kb)
  • Retrieve 3LU8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LU8 from S2C, [Save to disk]
  • Re-refined 3lu8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LU8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LU8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3LU8, from MSDmotif at EBI
  • Fold representative 3lu8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lu8] [3lu8_A] [3lu8_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LU8: [ALBUMIN ] by SMART
  • Alignments of the sequence of 3LU8 with the sequences similar proteins can be viewed for 3LU8's classification at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3LU8
  • Community annotation for 3LU8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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