3LUD Rna Binding Protein date Feb 17, 2010
title Crystal Structure Of Mid Domain From Hago2 In Complex With A
authors F.Frank, N.Sonenberg, B.Nagar
compound source
Molecule: Protein Argonaute-2
Chain: A, B, C
Fragment: Mid Domain
Synonym: Argonaute2, Hago2, Protein Slicer, Paz Piwi Domain Ppd, Eukaryotic Translation Initiation Factor 2c 2, Eif-2c 2;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eif2c2, Ago2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.185 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.521 47.387 66.388 86.36 72.71 83.59
method X-Ray Diffractionresolution 2.10 Å
ligand AMP, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructural basis for 5'-nucleotide base-specific recognition of guide RNA by human AGO2., Frank F, Sonenberg N, Nagar B, Nature. 2010 Jun 10;465(7299):818-22. Epub 2010 May 26. PMID:20505670
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (3lud.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (3lud.pdb2.gz) 23 Kb
  • Biological Unit Coordinates (3lud.pdb3.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 3LUD
  • CSU: Contacts of Structural Units for 3LUD
  • Structure Factors (286 Kb)
  • Retrieve 3LUD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LUD from S2C, [Save to disk]
  • Re-refined 3lud structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LUD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LUD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LUD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lud_B] [3lud_C] [3lud_A] [3lud]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LUD
  • Community annotation for 3LUD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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