3LUP Structure Genomics, Unknown Function date Feb 18, 2010
title Crystal Structure Of Fatty Acid Binding Degv Family Protein From Streptococcus Agalactiae
authors C.Chang, R.Wu, S.Clancy, A.Joachimiak, Midwest Center For Struct Genomics (Mcsg)
compound source
Molecule: Degv Family Protein
Chain: A
Engineered: Yes
 Organism_scientific: Streptococcus Agalactiae
Organism_taxid: 208435
Strain: 2603vr
Gene: Sag1342
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg19
symmetry Space Group: P 21 21 21
R_factor 0.197 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.321 84.205 87.541 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand ELA, GOL, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (3lup.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 3LUP
  • CSU: Contacts of Structural Units for 3LUP
  • Structure Factors (329 Kb)
  • Retrieve 3LUP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LUP from S2C, [Save to disk]
  • Re-refined 3lup structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3LUP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3LUP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LUP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lup] [3lup_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3LUP
  • Community annotation for 3LUP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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